Variant report

Variant	rs12002641
Chromosome Location	chr9:117573803-117573804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10119943	1.00[EUR][1000 genomes]
rs12004499	1.00[EUR][1000 genomes]
rs1891836	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181375	1.00[EUR][1000 genomes]
rs7041886	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117568800-117576200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117569800-117582600	Weak transcription	Pancreas	Pancrea
3	chr9:117572800-117576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:117573200-117577600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:117573400-117574600	Enhancers	HMEC	breast
6	chr9:117573600-117574000	Enhancers	Brain Hippocampus Middle	brain
7	chr9:117573600-117574600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:117573600-117575400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr9:117573600-117575600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:117573600-117576200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:117573800-117574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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