Variant report

Variant	rs12004499
Chromosome Location	chr9:117643711-117643712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10119943	1.00[EUR][1000 genomes]
rs12002641	1.00[EUR][1000 genomes]
rs1891836	1.00[EUR][1000 genomes]
rs3181375	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7041886	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117633000-117647400	Weak transcription	Stomach Mucosa	stomach
2	chr9:117642200-117643800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:117642200-117644000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:117642400-117649000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:117643000-117643800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:117643000-117652000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:117643200-117647200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links