Variant report

Variant	rs3181375
Chromosome Location	chr9:117664750-117664751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117660259..117663236-chr9:117664218..117666178,2	MCF-7	breast:
2	chr9:117653018..117655628-chr9:117662655..117665359,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEC1-7	chr9:117664203-117664893	NONHSAT134406

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10119943	1.00[EUR][1000 genomes]
rs12002641	1.00[EUR][1000 genomes]
rs12004499	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1891836	1.00[EUR][1000 genomes]
rs7041886	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831695	chr9:117567626-117726247	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893767	chr9:117627569-117689838	Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117655600-117664800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:117657800-117665400	Enhancers	HUVEC	blood vessel
3	chr9:117657800-117669600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:117658400-117665200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:117658400-117665800	Enhancers	NHDF-Ad	bronchial
6	chr9:117658400-117667400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:117658600-117669200	Weak transcription	Fetal Stomach	stomach
8	chr9:117659600-117665400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:117660600-117665400	Enhancers	Osteobl	bone
10	chr9:117660600-117665600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117661200-117665800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:117661200-117665800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:117661600-117665400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117661800-117665600	Enhancers	HSMM	muscle
15	chr9:117661800-117665600	Enhancers	NHLF	lung
16	chr9:117661800-117669800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:117662000-117665400	Weak transcription	Spleen	Spleen
18	chr9:117662200-117665200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:117662200-117676200	Weak transcription	Gastric	stomach
20	chr9:117662600-117665600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:117662800-117665200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:117662800-117665200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:117662800-117665200	Enhancers	NH-A	brain
24	chr9:117662800-117665800	Genic enhancers	Primary T cells from cord blood	blood
25	chr9:117662800-117666800	Weak transcription	Adipose Nuclei	Adipose
26	chr9:117662800-117670600	Weak transcription	Esophagus	oesophagus
27	chr9:117663000-117665200	Genic enhancers	Primary T cells fromperipheralblood	blood
28	chr9:117663000-117665200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:117663000-117665400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:117663000-117668600	Weak transcription	Placenta	Placenta
31	chr9:117663000-117669200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:117663200-117664800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:117663200-117665200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
34	chr9:117663200-117665800	Enhancers	HMEC	breast
35	chr9:117663200-117666000	Enhancers	Placenta Amnion	Placenta Amnion
36	chr9:117663200-117666800	Genic enhancers	Dnd41	blood
37	chr9:117663200-117669000	Strong transcription	Primary B cells from cord blood	blood
38	chr9:117663400-117664800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:117663400-117665000	Weak transcription	Fetal Thymus	thymus
40	chr9:117663400-117666600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr9:117663400-117672800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr9:117663600-117665800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:117663600-117665800	Enhancers	NHEK	skin
44	chr9:117663600-117666200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr9:117663600-117667400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:117663600-117668200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr9:117663600-117669000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr9:117663600-117672400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr9:117663800-117664800	Genic enhancers	Thymus	Thymus
50	chr9:117663800-117666600	Strong transcription	Primary hematopoietic stem cells	blood

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