Variant report

Variant	rs10129767
Chromosome Location	chr14:79475648-79475649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10129622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134044	1.00[AMR][1000 genomes]
rs10134881	1.00[AMR][1000 genomes]
rs10136667	1.00[AMR][1000 genomes]
rs10143938	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144702	1.00[AMR][1000 genomes]
rs10150043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10438175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379131	1.00[AMR][1000 genomes]
rs28540711	0.99[AFR][1000 genomes]
rs28667554	1.00[AMR][1000 genomes]
rs28673990	1.00[AMR][1000 genomes]
rs60089514	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60147420	1.00[AMR][1000 genomes]
rs7141297	1.00[AMR][1000 genomes]
rs73316615	1.00[AMR][1000 genomes]
rs73316627	1.00[AMR][1000 genomes]
rs73317248	0.93[AFR][1000 genomes]
rs73317251	0.96[AFR][1000 genomes]
rs73317278	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318802	1.00[AMR][1000 genomes]
rs73320815	1.00[AMR][1000 genomes]
rs73332955	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014991	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041198	chr14:79452019-79482977	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79475600-79477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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