Variant report

Variant	rs73332955
Chromosome Location	chr14:79484014-79484015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10129622	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129767	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10132523	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134044	1.00[AMR][1000 genomes]
rs10134881	1.00[AMR][1000 genomes]
rs10136667	1.00[AMR][1000 genomes]
rs10143938	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144702	1.00[AMR][1000 genomes]
rs10150043	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150236	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10438175	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379131	1.00[AMR][1000 genomes]
rs28540711	0.97[AFR][1000 genomes]
rs28667554	1.00[AMR][1000 genomes]
rs28673990	1.00[AMR][1000 genomes]
rs60089514	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60147420	1.00[AMR][1000 genomes]
rs7141297	1.00[AMR][1000 genomes]
rs73316615	1.00[AMR][1000 genomes]
rs73316627	1.00[AMR][1000 genomes]
rs73317248	0.91[AFR][1000 genomes]
rs73317251	0.95[AFR][1000 genomes]
rs73317278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73317280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73318802	1.00[AMR][1000 genomes]
rs73320815	1.00[AMR][1000 genomes]
rs8014991	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79478200-79485400	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79478400-79485200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:79482200-79484200	Enhancers	HSMMtube	muscle
4	chr14:79482400-79485800	Enhancers	Osteobl	bone
5	chr14:79482600-79486200	Enhancers	HSMM	muscle
6	chr14:79482600-79486200	Enhancers	NHLF	lung
7	chr14:79482800-79486000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:79482800-79486200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:79483000-79484200	Enhancers	NH-A	brain
10	chr14:79483800-79484800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:79483800-79484800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:79483800-79485000	Weak transcription	NHEK	skin
13	chr14:79483800-79485200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:79483800-79485400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:79483800-79487800	Weak transcription	Fetal Muscle Leg	muscle
16	chr14:79484000-79484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:79484000-79484800	Weak transcription	NHDF-Ad	bronchial
18	chr14:79484000-79485200	Weak transcription	HMEC	breast

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