Variant report

Variant	rs7141297
Chromosome Location	chr14:79503512-79503513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129622	1.00[AMR][1000 genomes]
rs10129767	1.00[AMR][1000 genomes]
rs10129768	0.82[YRI][hapmap]
rs10132523	1.00[AMR][1000 genomes]
rs10134044	1.00[AMR][1000 genomes]
rs10134881	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10143938	1.00[AMR][1000 genomes]
rs10144702	1.00[AMR][1000 genomes]
rs10150043	1.00[AMR][1000 genomes]
rs10150236	1.00[AMR][1000 genomes]
rs10150326	1.00[AMR][1000 genomes]
rs10151063	1.00[AMR][1000 genomes]
rs10438175	1.00[AMR][1000 genomes]
rs13379131	1.00[AMR][1000 genomes]
rs28667554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673990	1.00[AMR][1000 genomes]
rs60089514	1.00[AMR][1000 genomes]
rs60147420	1.00[AMR][1000 genomes]
rs73316615	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73316627	1.00[AMR][1000 genomes]
rs73317278	1.00[AMR][1000 genomes]
rs73317280	1.00[AMR][1000 genomes]
rs73318802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320815	1.00[AMR][1000 genomes]
rs73332955	1.00[AMR][1000 genomes]
rs8014991	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79495200-79506400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:79502200-79504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:79503000-79503800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:79503200-79504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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