Variant report

Variant	rs10131559
Chromosome Location	chr14:65905370-65905371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65692867..65695461-chr14:65904405..65906189,2	MCF-7	breast:
2	chr14:65904077..65906399-chr14:65944065..65947106,4	K562	blood:
3	chr14:65904341..65906356-chr14:65944065..65946546,2	K562	blood:
4	chr14:65894339..65896044-chr14:65904651..65907557,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1256529	1.00[EUR][1000 genomes]
rs1256532	1.00[EUR][1000 genomes]
rs1256535	1.00[EUR][1000 genomes]
rs1256545	1.00[EUR][1000 genomes]
rs17102656	1.00[MEX][hapmap]
rs17102765	1.00[MEX][hapmap]
rs17102767	1.00[MEX][hapmap]
rs17102769	1.00[MEX][hapmap]
rs28527359	1.00[EUR][1000 genomes]
rs55791657	1.00[EUR][1000 genomes]
rs61735911	1.00[EUR][1000 genomes]
rs6573603	1.00[EUR][1000 genomes]
rs7157497	1.00[EUR][1000 genomes]
rs7157687	1.00[EUR][1000 genomes]
rs74056715	1.00[EUR][1000 genomes]
rs74056720	1.00[EUR][1000 genomes]
rs8004406	1.00[EUR][1000 genomes]
rs8014200	1.00[EUR][1000 genomes]
rs9972252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr14:65888400-65905400	Weak transcription	Ovary	ovary
3	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
6	chr14:65898400-65935600	Weak transcription	Gastric	stomach
7	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart
9	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:65899800-65906000	Weak transcription	Placenta	Placenta
11	chr14:65899800-65917600	Weak transcription	Thymus	Thymus
12	chr14:65900000-65917400	Weak transcription	Fetal Thymus	thymus
13	chr14:65900200-65912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:65900400-65912800	Weak transcription	Brain Anterior Caudate	brain
15	chr14:65901200-65905400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:65901200-65907400	Weak transcription	HSMM	muscle
17	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:65901400-65905800	Weak transcription	Brain Substantia Nigra	brain
20	chr14:65901400-65910800	Weak transcription	Osteobl	bone
21	chr14:65901800-65917600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:65901800-65920200	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:65902800-65906000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr14:65903000-65905400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:65903000-65908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:65903000-65910200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:65903000-65911600	Weak transcription	Fetal Intestine Large	intestine
30	chr14:65903000-65911600	Weak transcription	Fetal Intestine Small	intestine
31	chr14:65903000-65917800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr14:65903200-65917600	Weak transcription	Fetal Stomach	stomach
33	chr14:65903200-65922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:65903400-65906000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr14:65903400-65906600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr14:65903600-65905400	Enhancers	GM12878-XiMat	blood
38	chr14:65903600-65906000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr14:65903600-65906200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr14:65904000-65905800	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:65904000-65906000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr14:65904000-65906000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:65904200-65905600	Enhancers	Primary T cells from cord blood	blood
44	chr14:65904200-65906000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr14:65904200-65912600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr14:65904400-65905400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr14:65904400-65905600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:65904400-65906200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr14:65904600-65913000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:65904800-65905600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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