Variant report

Variant	rs10131931
Chromosome Location	chr14:24372970-24372971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003761	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10130987	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10132842	1.00[EUR][1000 genomes]
rs10132966	1.00[EUR][1000 genomes]
rs10137220	1.00[EUR][1000 genomes]
rs10139119	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10145403	1.00[EUR][1000 genomes]
rs10145429	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10149177	1.00[EUR][1000 genomes]
rs10149300	1.00[EUR][1000 genomes]
rs10149833	1.00[EUR][1000 genomes]
rs10438148	1.00[EUR][1000 genomes]
rs10467814	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12898165	1.00[EUR][1000 genomes]
rs28386964	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28395171	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28570572	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55679614	1.00[EUR][1000 genomes]
rs56102008	1.00[EUR][1000 genomes]
rs57963483	1.00[EUR][1000 genomes]
rs61750885	1.00[EUR][1000 genomes]
rs7145419	1.00[EUR][1000 genomes]
rs73596902	1.00[EUR][1000 genomes]
rs73600731	1.00[EUR][1000 genomes]
rs73603047	1.00[EUR][1000 genomes]
rs8003140	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8004646	1.00[EUR][1000 genomes]
rs9323414	1.00[EUR][1000 genomes]
rs960267	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv976810	chr14:24355098-24391885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24370200-24373600	Weak transcription	Fetal Intestine Large	intestine
2	chr14:24372600-24373000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:24372800-24373400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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