Variant report

Variant	rs960267
Chromosome Location	chr14:24531789-24531790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24530724..24532664-chr14:24583388..24585313,2	MCF-7	breast:
2	chr14:24527087..24529685-chr14:24531747..24536004,3	K562	blood:
3	chr14:24531190..24534109-chr14:24584486..24587316,3	K562	blood:
4	chr14:24531633..24536059-chr14:24548958..24552161,5	MCF-7	breast:
5	chr14:24531291..24533346-chr14:24563553..24567538,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100889	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000129535	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1003761	1.00[EUR][1000 genomes]
rs10130987	1.00[EUR][1000 genomes]
rs10131931	1.00[EUR][1000 genomes]
rs10132842	1.00[EUR][1000 genomes]
rs10132966	1.00[EUR][1000 genomes]
rs10136840	1.00[EUR][1000 genomes]
rs10137220	1.00[EUR][1000 genomes]
rs10139119	1.00[EUR][1000 genomes]
rs10145403	1.00[EUR][1000 genomes]
rs10145429	1.00[EUR][1000 genomes]
rs10149177	1.00[EUR][1000 genomes]
rs10149300	1.00[EUR][1000 genomes]
rs10149833	1.00[EUR][1000 genomes]
rs10438148	1.00[EUR][1000 genomes]
rs10467814	1.00[EUR][1000 genomes]
rs28386964	1.00[EUR][1000 genomes]
rs28395171	1.00[EUR][1000 genomes]
rs28528158	1.00[EUR][1000 genomes]
rs28570572	1.00[EUR][1000 genomes]
rs55679614	1.00[EUR][1000 genomes]
rs56102008	1.00[EUR][1000 genomes]
rs57963483	1.00[EUR][1000 genomes]
rs61750885	1.00[EUR][1000 genomes]
rs7145419	1.00[EUR][1000 genomes]
rs73600731	1.00[EUR][1000 genomes]
rs73603047	1.00[EUR][1000 genomes]
rs8003140	1.00[EUR][1000 genomes]
rs8004646	1.00[EUR][1000 genomes]
rs9323414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv1049316	chr14:24405420-24583724	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv541999	chr14:24405420-24583724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv1052180	chr14:24429298-24555710	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv516023	chr14:24489605-24550224	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1036658	chr14:24513905-24555710	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
8	nsv456168	chr14:24525634-24618859	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv564057	chr14:24525634-24618859	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24522200-24539400	Weak transcription	Right Atrium	heart
2	chr14:24522200-24541000	Weak transcription	Spleen	Spleen
3	chr14:24522200-24547200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:24522200-24549400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:24522400-24534600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:24522400-24540000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:24523000-24539600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:24523000-24540800	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:24523200-24534200	Strong transcription	Brain Germinal Matrix	brain
10	chr14:24523200-24536200	Weak transcription	Brain Substantia Nigra	brain
11	chr14:24523200-24537400	Strong transcription	Fetal Brain Female	brain
12	chr14:24523200-24541200	Weak transcription	Esophagus	oesophagus
13	chr14:24525000-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:24525200-24539600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:24525800-24534600	Enhancers	Liver	Liver
16	chr14:24526200-24533600	Enhancers	Duodenum Mucosa	Duodenum
17	chr14:24527400-24533000	Enhancers	Fetal Intestine Large	intestine
18	chr14:24528000-24536600	Weak transcription	Colonic Mucosa	Colon
19	chr14:24528000-24538600	Weak transcription	Fetal Brain Male	brain
20	chr14:24528000-24540000	Weak transcription	Brain Anterior Caudate	brain
21	chr14:24528600-24541000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:24529600-24533600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:24529600-24539200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:24529800-24540000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:24530000-24532400	Enhancers	Pancreas	Pancrea
26	chr14:24530600-24532200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr14:24530800-24534200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:24530800-24534400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:24531000-24532600	Genic enhancers	Fetal Intestine Small	intestine
30	chr14:24531000-24535000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr14:24531200-24532200	Bivalent Enhancer	HepG2	liver
32	chr14:24531600-24536200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr14:24531600-24539400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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