Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:24374071..24375981-chr14:24379547..24381223,2	MCF-7	breast:
2	chr14:24367668..24369872-chr14:24380729..24382872,2	MCF-7	breast:
3	chr14:24379400..24381891-chr14:24382310..24386501,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1003761	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10130987	1.00[EUR][1000 genomes]
rs10131931	1.00[EUR][1000 genomes]
rs10132966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10139119	1.00[EUR][1000 genomes]
rs10145403	1.00[EUR][1000 genomes]
rs10145429	1.00[EUR][1000 genomes]
rs10149177	1.00[EUR][1000 genomes]
rs10149300	1.00[EUR][1000 genomes]
rs10149833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438148	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467814	1.00[EUR][1000 genomes]
rs12898165	1.00[EUR][1000 genomes]
rs17098897	1.00[AMR][1000 genomes]
rs17098965	1.00[AMR][1000 genomes]
rs17098981	1.00[AMR][1000 genomes]
rs28386964	1.00[EUR][1000 genomes]
rs28395171	1.00[EUR][1000 genomes]
rs28570572	1.00[EUR][1000 genomes]
rs55679614	1.00[EUR][1000 genomes]
rs56102008	1.00[EUR][1000 genomes]
rs57963483	1.00[EUR][1000 genomes]
rs59162310	1.00[AMR][1000 genomes]
rs60966948	1.00[AMR][1000 genomes]
rs61750885	1.00[EUR][1000 genomes]
rs7145419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7152821	1.00[AMR][1000 genomes]
rs73596902	1.00[EUR][1000 genomes]
rs73600731	1.00[EUR][1000 genomes]
rs73603047	1.00[EUR][1000 genomes]
rs8003140	1.00[EUR][1000 genomes]
rs8004646	1.00[EUR][1000 genomes]
rs9323414	1.00[EUR][1000 genomes]
rs960267	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv976810	chr14:24355098-24391885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24379600-24381600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr14:24380400-24384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:24381000-24381200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: