Variant report

Variant	rs17098981
Chromosome Location	chr14:24380975-24380976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10132842	1.00[AMR][1000 genomes]
rs10132966	1.00[AMR][1000 genomes]
rs10137220	1.00[AMR][1000 genomes]
rs10149833	1.00[AMR][1000 genomes]
rs10438148	1.00[AMR][1000 genomes]
rs17098897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098965	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59162310	1.00[AMR][1000 genomes]
rs60966948	1.00[AMR][1000 genomes]
rs7145419	1.00[AMR][1000 genomes]
rs7152821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv976810	chr14:24355098-24391885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24379600-24381000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr14:24379600-24381000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:24379600-24381600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:24380200-24381000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:24380400-24381000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:24380400-24384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links