Variant report

Variant	rs7152821
Chromosome Location	chr14:24297801-24297802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr14:24296927-24298031	HepG2	liver:	n/a	n/a
2	TCF7L2	chr14:24297148-24297904	HepG2	liver:	n/a	chr14:24297442-24297456

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24137621..24139131-chr14:24297384..24299665,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258887	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10132842	1.00[AMR][1000 genomes]
rs10132966	1.00[AMR][1000 genomes]
rs10137220	1.00[AMR][1000 genomes]
rs10149833	1.00[AMR][1000 genomes]
rs10438148	1.00[AMR][1000 genomes]
rs17098897	1.00[AMR][1000 genomes]
rs17098965	1.00[AMR][1000 genomes]
rs17098981	1.00[AMR][1000 genomes]
rs59162310	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60966948	1.00[AMR][1000 genomes]
rs7145419	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043299	chr14:23766696-24351724	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
3	nsv564045	chr14:24224245-24348343	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24295800-24302000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:24296400-24299800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:24296600-24298600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:24296600-24298600	Enhancers	A549	lung
7	chr14:24296600-24301200	Enhancers	HSMMtube	muscle
8	chr14:24296600-24301800	Enhancers	HSMM	muscle
9	chr14:24297000-24298200	Enhancers	Colonic Mucosa	Colon
10	chr14:24297000-24298400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:24297000-24298400	Enhancers	HepG2	liver
12	chr14:24297000-24298800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr14:24297000-24299000	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:24297200-24298600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:24297200-24301000	Enhancers	Hela-S3	cervix
16	chr14:24297400-24298400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:24297400-24298600	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:24297400-24298800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr14:24297400-24298800	Enhancers	Small Intestine	intestine
20	chr14:24297400-24299200	Enhancers	Colon Smooth Muscle	Colon
21	chr14:24297400-24299200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr14:24297400-24301600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr14:24297600-24299800	Enhancers	Rectal Smooth Muscle	rectum
24	chr14:24297600-24300400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:24297600-24300400	Weak transcription	Ovary	ovary
26	chr14:24297800-24298200	Weak transcription	Gastric	stomach
27	chr14:24297800-24298200	Weak transcription	Stomach Mucosa	stomach

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