Variant report

Variant	rs17098965
Chromosome Location	chr14:24380251-24380252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24135021..24135757-chr14:24379552..24380434,3	K562	blood:
2	chr14:24057948..24058785-chr14:24379654..24380433,3	MCF-7	breast:
3	chr14:24374071..24375981-chr14:24379547..24381223,2	MCF-7	breast:
4	chr14:24196509..24197383-chr14:24379485..24380305,3	MCF-7	breast:
5	chr14:24379532..24380450-chr14:24398433..24399596,4	MCF-7	breast:
6	chr14:24101138..24101802-chr14:24379345..24380372,3	MCF-7	breast:
7	chr14:24196065..24197211-chr14:24379506..24380505,6	MCF-7	breast:
8	chr14:24379400..24381891-chr14:24382310..24386501,5	MCF-7	breast:
9	chr14:24377314..24380302-chr14:24421961..24424811,2	MCF-7	breast:
10	chr14:23734440..23735164-chr14:24379754..24380308,2	K562	blood:
11	chr14:24100935..24102387-chr14:24378922..24380374,7	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10132842	1.00[AMR][1000 genomes]
rs10132966	1.00[AMR][1000 genomes]
rs10137220	1.00[AMR][1000 genomes]
rs10149833	1.00[AMR][1000 genomes]
rs10438148	1.00[AMR][1000 genomes]
rs17098897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59162310	1.00[AMR][1000 genomes]
rs60966948	1.00[AMR][1000 genomes]
rs7145419	1.00[AMR][1000 genomes]
rs7152821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv976810	chr14:24355098-24391885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24378400-24380400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:24379600-24380800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr14:24379600-24380800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:24379600-24381000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:24379600-24381000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:24379600-24381600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:24379800-24380600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:24380200-24380600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:24380200-24380800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:24380200-24380800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr14:24380200-24381000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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