Variant report

Variant	rs59162310
Chromosome Location	chr14:24300116-24300117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24293571..24296488-chr14:24298769..24300943,3	MCF-7	breast:
2	chr14:24293705..24296487-chr14:24298794..24300762,2	K562	blood:
3	chr14:24285592..24288155-chr14:24298380..24300344,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10132842	1.00[AMR][1000 genomes]
rs10132966	1.00[AMR][1000 genomes]
rs10137220	1.00[AMR][1000 genomes]
rs10149833	1.00[AMR][1000 genomes]
rs10438148	1.00[AMR][1000 genomes]
rs17098897	1.00[AMR][1000 genomes]
rs17098965	1.00[AMR][1000 genomes]
rs17098981	1.00[AMR][1000 genomes]
rs60966948	1.00[AMR][1000 genomes]
rs7145419	1.00[AMR][1000 genomes]
rs7152821	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043299	chr14:23766696-24351724	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
3	nsv564045	chr14:24224245-24348343	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901494	chr14:24243637-24386159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24295800-24302000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr14:24296400-24302000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:24296600-24301200	Enhancers	HSMMtube	muscle
5	chr14:24296600-24301800	Enhancers	HSMM	muscle
6	chr14:24297200-24301000	Enhancers	Hela-S3	cervix
7	chr14:24297400-24301600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr14:24297600-24300400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:24297600-24300400	Weak transcription	Ovary	ovary
10	chr14:24298200-24300200	Enhancers	NHDF-Ad	bronchial
11	chr14:24298400-24300600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:24298600-24300200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:24298600-24300600	Enhancers	Osteobl	bone
14	chr14:24298800-24300800	Weak transcription	Small Intestine	intestine
15	chr14:24298800-24301000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr14:24299000-24300400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:24299200-24301000	Enhancers	A549	lung
18	chr14:24299200-24302000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:24299600-24300200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:24299800-24300200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:24300000-24301000	Weak transcription	HUVEC	blood vessel

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