Variant report
| Variant | rs28570572 |
|---|---|
| Chromosome Location | chr14:24384198-24384199 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:24379400..24381891-chr14:24382310..24386501,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1003761 | 1.00[EUR][1000 genomes] |
| rs10130987 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10131931 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10132842 | 1.00[EUR][1000 genomes] |
| rs10132966 | 1.00[EUR][1000 genomes] |
| rs10137220 | 1.00[EUR][1000 genomes] |
| rs10139119 | 1.00[EUR][1000 genomes] |
| rs10145403 | 1.00[EUR][1000 genomes] |
| rs10145429 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10149177 | 1.00[EUR][1000 genomes] |
| rs10149300 | 1.00[EUR][1000 genomes] |
| rs10149833 | 1.00[EUR][1000 genomes] |
| rs10438148 | 1.00[EUR][1000 genomes] |
| rs10467814 | 1.00[EUR][1000 genomes] |
| rs12898165 | 1.00[EUR][1000 genomes] |
| rs28386964 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28395171 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55679614 | 1.00[EUR][1000 genomes] |
| rs56102008 | 1.00[EUR][1000 genomes] |
| rs57963483 | 1.00[EUR][1000 genomes] |
| rs61750885 | 1.00[EUR][1000 genomes] |
| rs7145419 | 1.00[EUR][1000 genomes] |
| rs73596902 | 1.00[EUR][1000 genomes] |
| rs73600731 | 1.00[EUR][1000 genomes] |
| rs73603047 | 1.00[EUR][1000 genomes] |
| rs8003140 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8004646 | 1.00[EUR][1000 genomes] |
| rs9323414 | 1.00[EUR][1000 genomes] |
| rs960267 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3405661 | chr14:24189883-24670942 | Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 131 gene(s) | inside rSNPs | diseases |
| 2 | nsv901494 | chr14:24243637-24386159 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv976810 | chr14:24355098-24391885 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:24380400-24384800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
