Variant report

Variant	rs10133926
Chromosome Location	chr14:38442701-38442702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10141795	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142558	1.00[CEU][hapmap]
rs1170027	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1952786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1954043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1958690	1.00[CEU][hapmap]
rs1958691	1.00[CEU][hapmap]
rs4901435	1.00[CEU][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs6571827	1.00[CEU][hapmap]
rs6571831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571832	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7143153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs944394	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38441800-38443400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr14:38442200-38443400	Enhancers	Duodenum Mucosa	Duodenum
3	chr14:38442200-38443400	Enhancers	HepG2	liver
4	chr14:38442200-38444400	Enhancers	Stomach Mucosa	stomach
5	chr14:38442600-38443000	Enhancers	Fetal Intestine Large	intestine
6	chr14:38442600-38443000	Enhancers	Fetal Lung	lung
7	chr14:38442600-38443000	Enhancers	Small Intestine	intestine
8	chr14:38442600-38444000	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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