Variant report

Variant	rs1958690
Chromosome Location	chr14:38371751-38371752
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10132442	0.89[JPT][hapmap]
rs10142558	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10151474	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10483494	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11629163	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1170026	0.83[YRI][hapmap]
rs11845414	0.82[JPT][hapmap]
rs11845696	0.82[JPT][hapmap]
rs11846034	0.82[JPT][hapmap]
rs11848963	0.82[JPT][hapmap]
rs11849824	0.82[JPT][hapmap]
rs12898186	0.91[JPT][hapmap]
rs17107371	0.82[JPT][hapmap]
rs17107373	0.82[JPT][hapmap]
rs1952778	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952786	1.00[CEU][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs1952792	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952796	0.91[JPT][hapmap]
rs1952797	0.91[JPT][hapmap]
rs1952798	0.91[JPT][hapmap]
rs1952800	0.91[JPT][hapmap]
rs1954043	1.00[CEU][hapmap]
rs1958687	0.91[JPT][hapmap]
rs1958688	0.91[JPT][hapmap]
rs1958691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958695	0.83[JPT][hapmap]
rs1958696	0.83[JPT][hapmap]
rs2022751	0.82[JPT][hapmap]
rs2150320	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2183529	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2415415	0.82[JPT][hapmap]
rs3825636	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3825637	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4611368	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4898766	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4901298	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4901319	0.91[JPT][hapmap]
rs4901435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6571823	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571824	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571825	0.91[JPT][hapmap]
rs6571827	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571831	0.82[CEU][hapmap]
rs7143153	1.00[CEU][hapmap]
rs7145460	0.91[JPT][hapmap]
rs7154349	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7155567	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7157544	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7157647	0.82[JPT][hapmap]
rs7158399	0.82[JPT][hapmap]
rs8015486	0.82[JPT][hapmap]
rs8016555	0.82[JPT][hapmap]
rs944394	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs944395	0.91[JPT][hapmap]
rs944396	0.91[JPT][hapmap]
rs953428	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3354861	chr14:38359630-38392369	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv994902	chr14:38368430-38374964	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38365000-38372600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:38370200-38371800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:38370200-38372200	Flanking Active TSS	NHDF-Ad	bronchial
4	chr14:38370800-38372200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:38371200-38371800	Enhancers	NH-A	brain
6	chr14:38371400-38372200	Weak transcription	NHLF	lung
7	chr14:38371400-38372600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:38371400-38373000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:38371400-38373000	Enhancers	Adipose Nuclei	Adipose
10	chr14:38371600-38372600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:38371600-38372600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:38371600-38372600	Weak transcription	Hela-S3	cervix
13	chr14:38371600-38372800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:38371600-38372800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:38371600-38373000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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