Variant report

Variant	rs12898186
Chromosome Location	chr14:38287924-38287925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10132442	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10142558	0.91[JPT][hapmap]
rs10151474	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10483494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11629163	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11845414	0.90[JPT][hapmap]
rs11845696	0.91[JPT][hapmap]
rs11846034	0.91[JPT][hapmap]
rs11848963	0.91[JPT][hapmap]
rs11849824	0.90[JPT][hapmap]
rs11850089	0.89[JPT][hapmap]
rs12882430	0.86[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap]
rs17107371	0.90[JPT][hapmap]
rs17107373	0.90[JPT][hapmap]
rs1952778	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1952782	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1952791	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1952792	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1952796	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1952797	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1952798	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1952800	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1958685	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1958686	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1958687	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1958688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1958690	0.91[JPT][hapmap]
rs1958691	0.91[JPT][hapmap]
rs1958695	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs1958696	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2022751	0.91[JPT][hapmap]
rs2150320	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2150321	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2183529	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415415	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3825636	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3825637	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs4611368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4898766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4901297	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4901298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4901299	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4901319	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4901435	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6571824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6571825	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6571827	0.91[JPT][hapmap]
rs7142116	0.89[JPT][hapmap]
rs7145460	0.87[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154349	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7155567	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7157544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7157647	0.90[JPT][hapmap]
rs7158399	0.91[JPT][hapmap]
rs8007708	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8015486	0.91[JPT][hapmap]
rs8015685	0.81[JPT][hapmap]
rs8016555	0.91[JPT][hapmap]
rs944394	0.91[JPT][hapmap]
rs944395	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs944396	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs953428	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
3	nsv564385	chr14:38246440-38321607	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1040555	chr14:38271184-38314601	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38279000-38289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:38280400-38295600	Weak transcription	Liver	Liver
3	chr14:38285200-38289800	Enhancers	HepG2	liver

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