Variant report

Variant	rs7142116
Chromosome Location	chr14:38439499-38439500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10132442	0.84[JPT][hapmap]
rs10151474	0.89[JPT][hapmap]
rs10483494	0.89[JPT][hapmap]
rs10498333	0.87[AMR][1000 genomes]
rs1113091	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11629163	0.89[JPT][hapmap]
rs11845414	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11845696	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11846034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11846599	0.80[AMR][1000 genomes]
rs11848653	0.80[AMR][1000 genomes]
rs11848963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11849824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11850089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11850193	0.86[CHB][hapmap]
rs12898186	0.89[JPT][hapmap]
rs17107371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107386	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107420	0.87[AMR][1000 genomes]
rs17107427	0.87[AMR][1000 genomes]
rs17107430	0.86[CHB][hapmap];0.87[AMR][1000 genomes]
rs1952778	0.89[JPT][hapmap]
rs1952792	0.89[JPT][hapmap]
rs1952796	0.89[JPT][hapmap]
rs1952797	0.89[JPT][hapmap]
rs1952798	0.89[JPT][hapmap]
rs1952800	0.89[JPT][hapmap]
rs1958687	0.89[JPT][hapmap]
rs1958688	0.88[JPT][hapmap]
rs2022751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2150320	0.89[JPT][hapmap]
rs2183529	0.89[JPT][hapmap]
rs2211213	0.87[AMR][1000 genomes]
rs35490681	0.95[ASN][1000 genomes]
rs3825636	0.89[JPT][hapmap]
rs3825637	0.89[JPT][hapmap]
rs4611368	0.89[JPT][hapmap]
rs4898766	0.88[JPT][hapmap]
rs4901298	0.89[JPT][hapmap]
rs4901319	0.89[JPT][hapmap]
rs6571823	0.89[JPT][hapmap]
rs6571824	0.89[JPT][hapmap]
rs6571825	0.89[JPT][hapmap]
rs7145460	0.89[JPT][hapmap]
rs7154349	0.89[JPT][hapmap]
rs7155567	0.89[JPT][hapmap]
rs7157423	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157544	0.88[JPT][hapmap]
rs7157647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7158399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8015486	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8015685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8015835	0.80[ASN][1000 genomes]
rs8016555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8020636	0.91[ASN][1000 genomes]
rs944395	0.89[JPT][hapmap]
rs944396	0.89[JPT][hapmap]
rs953428	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38437400-38440600	Enhancers	Fetal Intestine Large	intestine
2	chr14:38437400-38440600	Enhancers	Stomach Mucosa	stomach
3	chr14:38437600-38439800	Enhancers	Dnd41	blood
4	chr14:38438400-38440600	Enhancers	Fetal Intestine Small	intestine
5	chr14:38438600-38439600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr14:38438600-38439600	Enhancers	Duodenum Mucosa	Duodenum
7	chr14:38438800-38441800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:38439200-38439600	Weak transcription	Pancreas	Pancrea

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