Variant report

Variant	rs10498333
Chromosome Location	chr14:38483515-38483516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1113091	0.85[CHB][hapmap]
rs11844176	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11845414	1.00[GIH][hapmap];0.88[MEX][hapmap]
rs11845696	0.86[CHB][hapmap]
rs11845813	1.00[EUR][1000 genomes]
rs11846034	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs11846599	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848653	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848963	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs11849824	0.86[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap]
rs11850193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17107371	0.86[CHB][hapmap];0.85[CHD][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs17107373	0.86[CHB][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs17107420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107430	0.81[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1959674	0.80[ASN][1000 genomes]
rs2022751	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs2211212	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2211213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35490681	1.00[EUR][1000 genomes]
rs7142116	0.86[CHB][hapmap];0.87[AMR][1000 genomes]
rs7157423	0.82[AMR][1000 genomes]
rs7157647	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs7158399	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs8015486	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs8015685	0.86[CHB][hapmap]
rs8015835	1.00[EUR][1000 genomes]
rs8016555	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs8020636	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38478600-38483600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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