Variant report

Variant	rs11845813
Chromosome Location	chr14:38467088-38467089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:38457014..38460339-chr14:38466968..38469641,3	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10151474	0.81[JPT][hapmap]
rs10483494	0.81[JPT][hapmap]
rs10498333	1.00[EUR][1000 genomes]
rs1113091	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs11629163	0.81[JPT][hapmap]
rs11844176	1.00[EUR][1000 genomes]
rs11844598	0.85[YRI][hapmap]
rs11844826	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11845414	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap]
rs11845696	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11846034	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11846599	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846843	0.85[YRI][hapmap]
rs11847958	0.85[YRI][hapmap]
rs11848653	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848963	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11849824	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap]
rs11850089	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11850112	0.83[MKK][hapmap];0.85[YRI][hapmap]
rs11850193	0.86[CHB][hapmap]
rs11851267	0.85[YRI][hapmap]
rs11851318	0.85[YRI][hapmap]
rs12882430	0.83[JPT][hapmap]
rs12898186	0.81[JPT][hapmap]
rs17107371	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap]
rs17107373	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap]
rs17107420	1.00[EUR][1000 genomes]
rs17107427	1.00[EUR][1000 genomes]
rs17107430	0.86[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs1952778	0.81[JPT][hapmap]
rs1952792	0.81[JPT][hapmap]
rs1952796	0.81[JPT][hapmap]
rs1952797	0.81[JPT][hapmap]
rs1952798	0.81[JPT][hapmap]
rs1952800	0.81[JPT][hapmap]
rs1954017	0.92[ASN][1000 genomes]
rs1958687	0.81[JPT][hapmap]
rs1959674	0.94[ASN][1000 genomes]
rs2022751	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2150320	0.81[JPT][hapmap]
rs2183529	0.81[JPT][hapmap]
rs2211213	1.00[EUR][1000 genomes]
rs35490681	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3825636	0.81[JPT][hapmap]
rs3825637	0.81[JPT][hapmap]
rs4611368	0.81[JPT][hapmap]
rs4901298	0.81[JPT][hapmap]
rs4901319	0.81[JPT][hapmap]
rs6571823	0.81[JPT][hapmap]
rs6571824	0.81[JPT][hapmap]
rs6571825	0.81[JPT][hapmap]
rs7142116	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7145460	0.81[JPT][hapmap]
rs7154349	0.81[JPT][hapmap]
rs7155567	0.81[JPT][hapmap]
rs7157544	0.80[JPT][hapmap]
rs7157647	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7158399	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8015486	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8015685	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs8015835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8016555	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8020636	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs944395	0.81[JPT][hapmap]
rs944396	0.81[JPT][hapmap]
rs953428	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38464200-38471000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:38464800-38470000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:38465000-38470000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:38465000-38470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:38465000-38471000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:38465000-38473000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:38465000-38473200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:38465200-38468400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:38465200-38470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:38465600-38467200	Enhancers	Fetal Brain Male	brain
11	chr14:38465800-38470800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:38466000-38468400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:38466200-38470600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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