Variant report

Variant	rs8016555
Chromosome Location	chr14:38425907-38425908
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10132442	0.88[JPT][hapmap]
rs10142558	0.82[JPT][hapmap]
rs10151474	0.90[JPT][hapmap]
rs10483494	0.90[JPT][hapmap]
rs10498333	1.00[EUR][1000 genomes]
rs1113091	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs11629163	0.91[JPT][hapmap]
rs11844176	1.00[EUR][1000 genomes]
rs11844598	1.00[YRI][hapmap]
rs11844826	0.88[AMR][1000 genomes]
rs11845209	0.85[YRI][hapmap]
rs11845414	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11845696	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11845813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11846599	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11846843	1.00[YRI][hapmap]
rs11847958	1.00[YRI][hapmap]
rs11848653	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848963	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11849824	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11850089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11850112	1.00[YRI][hapmap]
rs11850193	0.86[CHB][hapmap]
rs11851267	1.00[YRI][hapmap]
rs11851318	1.00[YRI][hapmap]
rs12898186	0.91[JPT][hapmap]
rs17107371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107373	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17107386	0.95[ASN][1000 genomes]
rs17107420	1.00[EUR][1000 genomes]
rs17107427	1.00[EUR][1000 genomes]
rs17107430	0.86[CHB][hapmap];1.00[EUR][1000 genomes]
rs1952778	0.91[JPT][hapmap]
rs1952792	0.91[JPT][hapmap]
rs1952796	0.90[JPT][hapmap]
rs1952797	0.91[JPT][hapmap]
rs1952798	0.90[JPT][hapmap]
rs1952800	0.91[JPT][hapmap]
rs1958687	0.91[JPT][hapmap]
rs1958688	0.90[JPT][hapmap]
rs1958690	0.82[JPT][hapmap]
rs1958691	0.82[JPT][hapmap]
rs1958695	0.82[JPT][hapmap]
rs1958696	0.82[JPT][hapmap]
rs2022751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2150320	0.91[JPT][hapmap]
rs2183529	0.91[JPT][hapmap]
rs2211213	1.00[EUR][1000 genomes]
rs2415415	0.82[JPT][hapmap]
rs35490681	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3825636	0.91[JPT][hapmap]
rs3825637	0.91[JPT][hapmap]
rs4611368	0.90[JPT][hapmap]
rs4898766	0.90[JPT][hapmap]
rs4901298	0.90[JPT][hapmap]
rs4901319	0.90[JPT][hapmap]
rs4901435	0.82[JPT][hapmap]
rs6571823	0.90[JPT][hapmap]
rs6571824	0.90[JPT][hapmap]
rs6571825	0.91[JPT][hapmap]
rs6571827	0.82[JPT][hapmap]
rs7142116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7145460	0.91[JPT][hapmap]
rs7154349	0.91[JPT][hapmap]
rs7155567	0.90[JPT][hapmap]
rs7157423	0.91[ASN][1000 genomes]
rs7157544	0.90[JPT][hapmap]
rs7157647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7158399	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8015486	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8015685	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs8015835	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8020636	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs944394	0.82[JPT][hapmap]
rs944395	0.91[JPT][hapmap]
rs944396	0.90[JPT][hapmap]
rs953428	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3365884	chr14:38419250-38438768	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38425600-38426600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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