Variant report

Variant	rs1958691
Chromosome Location	chr14:38363921-38363922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:38056746..38059083-chr14:38363861..38366801,2	MCF-7	breast:
2	chr14:38363021..38365119-chr14:38365586..38368317,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10132442	0.89[JPT][hapmap]
rs10142558	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10151474	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10483494	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11629163	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1170026	0.83[YRI][hapmap]
rs11845414	0.82[JPT][hapmap]
rs11845696	0.82[JPT][hapmap]
rs11846034	0.82[JPT][hapmap]
rs11848963	0.82[JPT][hapmap]
rs11849824	0.82[JPT][hapmap]
rs12898186	0.91[JPT][hapmap]
rs17107371	0.82[JPT][hapmap]
rs17107373	0.82[JPT][hapmap]
rs1952778	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952786	1.00[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1952792	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952796	0.91[JPT][hapmap]
rs1952797	0.91[JPT][hapmap]
rs1952798	0.91[JPT][hapmap]
rs1952800	0.91[JPT][hapmap]
rs1954043	1.00[CEU][hapmap]
rs1958687	0.91[JPT][hapmap]
rs1958688	0.90[JPT][hapmap]
rs1958690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958695	0.83[JPT][hapmap]
rs1958696	0.83[JPT][hapmap]
rs2022751	0.82[JPT][hapmap]
rs2150320	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2183529	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2415415	0.82[JPT][hapmap]
rs3825636	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3825637	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4611368	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4898766	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4901298	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4901319	0.91[JPT][hapmap]
rs4901435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6571823	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571824	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571825	0.91[JPT][hapmap]
rs6571827	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6571831	0.82[CEU][hapmap]
rs7143153	1.00[CEU][hapmap]
rs7145460	0.91[JPT][hapmap]
rs7154349	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7155567	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7157544	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7157647	0.82[JPT][hapmap]
rs7158399	0.82[JPT][hapmap]
rs72679031	0.83[EUR][1000 genomes]
rs8015486	0.82[JPT][hapmap]
rs8016555	0.82[JPT][hapmap]
rs944394	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs944395	0.91[JPT][hapmap]
rs944396	0.91[JPT][hapmap]
rs953428	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564386	chr14:38311855-38365605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv11220	chr14:38358854-38365766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv564388	chr14:38359157-38364067	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv564389	chr14:38359157-38364531	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv564390	chr14:38359157-38364878	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv564391	chr14:38359157-38365258	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv564392	chr14:38359157-38365605	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv564393	chr14:38359157-38368184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3354861	chr14:38359630-38392369	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv564394	chr14:38362374-38364531	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv564395	chr14:38362787-38365258	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv564396	chr14:38362787-38365605	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38362400-38364400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr14:38362800-38364800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:38362800-38365000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:38362800-38365200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:38363200-38364200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:38363200-38364400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr14:38363400-38364200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:38363600-38364400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:38363800-38364000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:38363800-38371000	Weak transcription	Psoas Muscle	Psoas

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