Variant report

Variant	rs10142558
Chromosome Location	chr14:38381320-38381321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10132442	0.89[JPT][hapmap]
rs10151474	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs10483494	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs11629163	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1170026	0.83[YRI][hapmap]
rs1170027	0.82[AFR][1000 genomes]
rs11845414	0.82[JPT][hapmap]
rs11845696	0.82[JPT][hapmap]
rs11846034	0.82[JPT][hapmap]
rs11848963	0.82[JPT][hapmap]
rs11849824	0.82[JPT][hapmap]
rs12898186	0.91[JPT][hapmap]
rs17107371	0.82[JPT][hapmap]
rs17107373	0.82[JPT][hapmap]
rs1952778	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952786	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1952792	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1952796	0.91[JPT][hapmap]
rs1952797	0.91[JPT][hapmap]
rs1952798	0.91[JPT][hapmap]
rs1952800	0.91[JPT][hapmap]
rs1954043	1.00[CEU][hapmap]
rs1958687	0.91[JPT][hapmap]
rs1958688	0.91[JPT][hapmap]
rs1958690	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958691	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958695	0.83[JPT][hapmap]
rs1958696	0.83[JPT][hapmap]
rs2022751	0.82[JPT][hapmap]
rs2150320	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2183529	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2415415	0.82[JPT][hapmap]
rs3825636	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3825637	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4611368	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4898766	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs4901298	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4901319	0.91[JPT][hapmap]
rs4901435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6571823	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571824	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs6571825	0.91[JPT][hapmap]
rs6571827	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571831	1.00[CEU][hapmap]
rs7143153	1.00[CEU][hapmap]
rs7145460	0.91[JPT][hapmap]
rs7154349	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7155567	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs7157544	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7157647	0.82[JPT][hapmap]
rs7158399	0.82[JPT][hapmap]
rs8015486	0.82[JPT][hapmap]
rs8016555	0.82[JPT][hapmap]
rs944394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs944395	0.91[JPT][hapmap]
rs944396	0.91[JPT][hapmap]
rs953428	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3354861	chr14:38359630-38392369	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links