Variant report
Variant | rs17107427 |
---|---|
Chromosome Location | chr14:38478841-38478842 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000258696 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10498333 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs11844176 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11845813 | 1.00[EUR][1000 genomes] |
rs11846034 | 0.82[AMR][1000 genomes] |
rs11846599 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11848653 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11848963 | 0.82[AMR][1000 genomes] |
rs11850193 | 0.88[ASN][1000 genomes] |
rs17107371 | 0.82[AMR][1000 genomes] |
rs17107373 | 0.82[AMR][1000 genomes] |
rs17107420 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17107430 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1959674 | 0.81[AFR][1000 genomes] |
rs2022751 | 0.82[AMR][1000 genomes] |
rs2211212 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2211213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs35490681 | 1.00[EUR][1000 genomes] |
rs7142116 | 0.87[AMR][1000 genomes] |
rs7157423 | 0.82[AMR][1000 genomes] |
rs7157647 | 0.82[AMR][1000 genomes] |
rs7158399 | 0.82[AMR][1000 genomes] |
rs8015486 | 0.82[AMR][1000 genomes] |
rs8015835 | 1.00[EUR][1000 genomes] |
rs8016555 | 1.00[EUR][1000 genomes] |
rs8020636 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
2 | nsv564387 | chr14:38357864-38563111 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv901651 | chr14:38419360-38556242 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:38478600-38483600 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |