Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:38457014..38460339-chr14:38466968..38469641,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10498333	0.80[ASN][1000 genomes]
rs1113091	1.00[CHB][hapmap]
rs11844826	0.90[ASN][1000 genomes]
rs11845414	0.88[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs11845696	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11845813	0.94[ASN][1000 genomes]
rs11846034	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11848963	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11849824	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs11850089	1.00[CHB][hapmap]
rs11850193	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs17107266	1.00[CEU][hapmap]
rs17107295	1.00[CEU][hapmap]
rs17107371	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs17107373	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap]
rs17107420	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17107427	0.81[AFR][1000 genomes]
rs17107430	0.93[ASW][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.83[AFR][1000 genomes]
rs1954017	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2022751	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2211212	0.81[AFR][1000 genomes]
rs2211213	0.81[AFR][1000 genomes]
rs35490681	0.82[ASN][1000 genomes]
rs7142116	1.00[CHB][hapmap]
rs7149307	1.00[CEU][hapmap]
rs7157647	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7158399	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8015486	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8015685	1.00[CHB][hapmap]
rs8016555	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8020636	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38464200-38471000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:38464800-38470000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:38465000-38470000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:38465000-38470000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:38465000-38471000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:38465000-38473000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:38465000-38473200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:38465200-38470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:38465800-38470800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:38466200-38470600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr14:38468400-38468600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:38468400-38468800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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