Variant report
| Variant | rs35490681 |
|---|---|
| Chromosome Location | chr14:38451164-38451165 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10498333 | 1.00[EUR][1000 genomes] |
| rs11844176 | 1.00[EUR][1000 genomes] |
| rs11844826 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11845813 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11846599 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11848653 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11848963 | 0.82[ASN][1000 genomes] |
| rs17107371 | 0.91[ASN][1000 genomes] |
| rs17107373 | 0.91[ASN][1000 genomes] |
| rs17107386 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17107420 | 1.00[EUR][1000 genomes] |
| rs17107427 | 1.00[EUR][1000 genomes] |
| rs17107430 | 1.00[EUR][1000 genomes] |
| rs1954017 | 0.80[ASN][1000 genomes] |
| rs1959674 | 0.82[ASN][1000 genomes] |
| rs2211213 | 1.00[EUR][1000 genomes] |
| rs7142116 | 0.95[ASN][1000 genomes] |
| rs7157423 | 0.82[ASN][1000 genomes] |
| rs7157647 | 0.82[ASN][1000 genomes] |
| rs7158399 | 0.82[ASN][1000 genomes] |
| rs8015486 | 0.91[ASN][1000 genomes] |
| rs8015835 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8016555 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8020636 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916985 | chr14:38052347-38838551 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 59 gene(s) | inside rSNPs | diseases |
| 2 | nsv564387 | chr14:38357864-38563111 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv901651 | chr14:38419360-38556242 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:38449600-38451800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
