Variant report

Variant	rs10136489
Chromosome Location	chr14:64007702-64007703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64007697..64011476-chr14:64104829..64109373,5	K562	blood:
2	chr14:64004593..64008285-chr14:64011682..64013819,3	K562	blood:
3	chr14:64002202..64003866-chr14:64005785..64007726,2	K562	blood:
4	chr14:64007045..64008979-chr14:64009099..64011575,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154001	Chromatin interaction
ENSG00000261242	Chromatin interaction
ENSG00000140006	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10139904	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10142811	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143003	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10148041	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10150465	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10467817	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10498508	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12050157	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12323619	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12433448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28479545	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28688632	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28712544	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28834707	0.90[EUR][1000 genomes]
rs3783738	0.90[EUR][1000 genomes]
rs4902233	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4902234	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55858056	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60971465	0.89[EUR][1000 genomes]
rs61983974	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61983975	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61984001	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61984002	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61984003	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61984005	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145363	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145769	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7151914	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153729	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7158543	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72716312	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63960200-64008600	Weak transcription	HSMMtube	muscle
2	chr14:63970200-64008600	Weak transcription	Aorta	Aorta
3	chr14:63972600-64008800	Weak transcription	Esophagus	oesophagus
4	chr14:63974800-64007800	Weak transcription	Fetal Brain Male	brain
5	chr14:63975000-64008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:63980800-64008000	Weak transcription	Small Intestine	intestine
7	chr14:63981800-64008000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:63988800-64008200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:63990000-64008800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:63991400-64007800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr14:63991600-64008200	Weak transcription	Colonic Mucosa	Colon
12	chr14:63991800-64008200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:63991800-64008800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:63991800-64008800	Weak transcription	Gastric	stomach
15	chr14:63991800-64008800	Weak transcription	Pancreas	Pancrea
16	chr14:63992000-64007800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:63992000-64008800	Weak transcription	Psoas Muscle	Psoas
18	chr14:63992400-64008000	Weak transcription	Right Ventricle	heart
19	chr14:63996800-64008000	Weak transcription	Stomach Mucosa	stomach
20	chr14:63999800-64008600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:63999800-64009000	Weak transcription	Spleen	Spleen
22	chr14:64002000-64008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:64002400-64008200	Strong transcription	HSMM	muscle
24	chr14:64003400-64007800	Weak transcription	Brain Substantia Nigra	brain
25	chr14:64003600-64008000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:64005000-64007800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:64005000-64008000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr14:64005000-64008200	Weak transcription	Primary T cells from cord blood	blood
29	chr14:64005200-64008800	Weak transcription	Left Ventricle	heart
30	chr14:64005200-64008800	Weak transcription	Ovary	ovary
31	chr14:64005400-64007800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:64005400-64008000	Weak transcription	Thymus	Thymus
33	chr14:64006200-64007800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:64006400-64007800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr14:64006400-64007800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:64006400-64008000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:64006400-64008000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:64006400-64008000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:64006400-64008000	Weak transcription	Brain Angular Gyrus	brain
40	chr14:64006400-64008000	Weak transcription	Fetal Lung	lung
41	chr14:64006400-64008000	Weak transcription	HMEC	breast
42	chr14:64006400-64008000	Weak transcription	K562	blood
43	chr14:64006400-64008200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:64006400-64008400	Weak transcription	Primary B cells from cord blood	blood
45	chr14:64006400-64008400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr14:64006400-64008800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr14:64006600-64007800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr14:64006600-64007800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr14:64006600-64007800	Weak transcription	Fetal Brain Female	brain
50	chr14:64006600-64007800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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