Variant report

Variant	rs7145363
Chromosome Location	chr14:64032310-64032311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:64032256-64032858	HepG2	liver:	n/a	chr14:64032650-64032661
2	CEBPB	chr14:64032267-64032731	Hela-S3	cervix:	n/a	chr14:64032650-64032661

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64008630..64011700-chr14:64030153..64034050,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205767	TF binding region
ENSG00000261242	Chromatin interaction
ENSG00000154001	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10136489	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10142811	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10143003	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10148041	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[TSI][hapmap]
rs10150465	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10467817	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10498508	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12050157	1.00[CEU][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12323619	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12323783	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12433448	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28479545	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28688632	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28712544	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28834707	0.93[EUR][1000 genomes]
rs3783738	1.00[CEU][hapmap]
rs4902233	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4902234	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55858056	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61984001	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61984002	0.85[EUR][1000 genomes]
rs61984003	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61984005	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145769	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151914	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7153729	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7158543	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72716312	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv974442	chr14:64024425-64046914	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64029200-64032400	Enhancers	Hela-S3	cervix
2	chr14:64030200-64034800	Enhancers	Placenta	Placenta
3	chr14:64030800-64032400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:64031400-64032400	Weak transcription	HepG2	liver
5	chr14:64032200-64032400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:64032200-64032400	Enhancers	HMEC	breast

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