Variant report

Variant	rs7158543
Chromosome Location	chr14:64013158-64013159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64004593..64008285-chr14:64011682..64013819,3	K562	blood:
2	chr14:64011188..64013753-chr14:64017649..64019673,2	K562	blood:
3	chr14:64010284..64012282-chr14:64012657..64015493,5	MCF-7	breast:
4	chr14:64010795..64013799-chr14:64014716..64019149,4	K562	blood:

Variant related genes	Relation type
ENSG00000261242	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10136489	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10139904	0.87[EUR][1000 genomes]
rs10142811	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10143003	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10148041	0.87[EUR][1000 genomes]
rs10150465	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10467817	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10498508	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050157	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12323619	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12323783	0.80[EUR][1000 genomes]
rs12433448	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28479545	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28688632	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28712544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28834707	0.94[EUR][1000 genomes]
rs3783738	0.86[EUR][1000 genomes]
rs4902233	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902234	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55858056	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60971465	0.85[EUR][1000 genomes]
rs61983974	0.87[EUR][1000 genomes]
rs61983975	0.87[EUR][1000 genomes]
rs61984001	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61984002	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61984003	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61984005	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7145363	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7145769	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7151914	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7153729	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72716312	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64011000-64014400	Weak transcription	Placenta	Placenta
2	chr14:64011000-64021600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:64011600-64013200	Enhancers	Fetal Brain Male	brain
4	chr14:64011600-64014000	Weak transcription	K562	blood
5	chr14:64011600-64014800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:64011600-64018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:64011800-64014200	Weak transcription	HepG2	liver
8	chr14:64011800-64018000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:64012000-64018200	Weak transcription	A549	lung
10	chr14:64012200-64017800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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