Variant report

Variant	rs61984005
Chromosome Location	chr14:64016948-64016949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64010795..64013799-chr14:64014716..64019149,4	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10136489	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139904	0.83[EUR][1000 genomes]
rs10142811	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10143003	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10148041	0.83[EUR][1000 genomes]
rs10150465	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10467817	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10498508	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050157	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12323619	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12323783	0.84[EUR][1000 genomes]
rs12433448	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28479545	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28688632	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28712544	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28834707	0.98[EUR][1000 genomes]
rs3783738	0.82[EUR][1000 genomes]
rs4902233	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902234	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55858056	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60971465	0.80[EUR][1000 genomes]
rs61983974	0.83[EUR][1000 genomes]
rs61983975	0.83[EUR][1000 genomes]
rs61984001	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61984002	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61984003	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7145363	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145769	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151914	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153729	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7158543	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72716312	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64011000-64021600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:64011600-64018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:64011800-64018000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:64012000-64018200	Weak transcription	A549	lung
5	chr14:64012200-64017800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:64015200-64018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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