Variant report

Variant	rs10138490
Chromosome Location	chr14:80883798-80883799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10132092	0.84[AFR][1000 genomes]
rs10132409	0.84[AFR][1000 genomes]
rs10136149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10138306	0.84[AFR][1000 genomes]
rs10142492	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10149250	0.84[AFR][1000 genomes]
rs10149514	0.84[AFR][1000 genomes]
rs11623870	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13379335	0.84[AFR][1000 genomes]
rs17110647	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28421222	0.80[EUR][1000 genomes]
rs58477989	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58744906	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3337357	chr14:80883399-80885347	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80883600-80883800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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