Variant report
| Variant | rs10138306 |
|---|---|
| Chromosome Location | chr14:80883643-80883644 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10129556 | 1.00[ASN][1000 genomes] |
| rs10132092 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10132409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10136149 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10138490 | 0.84[AFR][1000 genomes] |
| rs10141508 | 1.00[ASN][1000 genomes] |
| rs10142492 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10144113 | 1.00[ASN][1000 genomes] |
| rs10149250 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10149514 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11623870 | 1.00[ASN][1000 genomes] |
| rs13379335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17110647 | 1.00[ASN][1000 genomes] |
| rs17110653 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17110731 | 1.00[CEU][hapmap] |
| rs17110737 | 1.00[MEX][hapmap] |
| rs28421222 | 1.00[ASN][1000 genomes] |
| rs28756816 | 1.00[ASN][1000 genomes] |
| rs58477989 | 1.00[ASN][1000 genomes] |
| rs58744906 | 1.00[ASN][1000 genomes] |
| rs61991560 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73338959 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902113 | chr14:80172094-80929699 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3337357 | chr14:80883399-80885347 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:80883600-80883800 | Enhancers | Stomach Mucosa | stomach |
