Variant report
| Variant | rs10144113 |
|---|---|
| Chromosome Location | chr14:80914959-80914960 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:80913917..80916409-chr14:80918301..80920954,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10129556 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10132092 | 1.00[ASN][1000 genomes] |
| rs10132409 | 1.00[ASN][1000 genomes] |
| rs10136149 | 1.00[ASN][1000 genomes] |
| rs10138306 | 1.00[ASN][1000 genomes] |
| rs10138857 | 0.85[AFR][1000 genomes] |
| rs10141508 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10142492 | 1.00[ASN][1000 genomes] |
| rs10148276 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10149250 | 1.00[ASN][1000 genomes] |
| rs10149514 | 1.00[ASN][1000 genomes] |
| rs10150645 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11623870 | 1.00[ASN][1000 genomes] |
| rs13379335 | 1.00[ASN][1000 genomes] |
| rs17110647 | 1.00[ASN][1000 genomes] |
| rs17110653 | 1.00[ASN][1000 genomes] |
| rs17110684 | 0.91[AMR][1000 genomes] |
| rs17110737 | 1.00[MEX][hapmap] |
| rs28421222 | 1.00[ASN][1000 genomes] |
| rs28756816 | 1.00[ASN][1000 genomes] |
| rs58477989 | 1.00[ASN][1000 genomes] |
| rs58744906 | 1.00[ASN][1000 genomes] |
| rs61991560 | 1.00[ASN][1000 genomes] |
| rs73338959 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902113 | chr14:80172094-80929699 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv15289 | chr14:80900600-80939903 | Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv974289 | chr14:80911851-80915626 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:80905800-80916800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
