Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10129556	1.00[ASN][1000 genomes]
rs10132092	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132409	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136149	1.00[ASN][1000 genomes]
rs10138306	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10141508	1.00[ASN][1000 genomes]
rs10142492	1.00[ASN][1000 genomes]
rs10144113	1.00[ASN][1000 genomes]
rs10149250	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10149514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623870	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13379335	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110647	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17110731	1.00[CEU][hapmap]
rs28421222	1.00[ASN][1000 genomes]
rs28756816	1.00[ASN][1000 genomes]
rs58477989	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58744906	1.00[ASN][1000 genomes]
rs61991560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338959	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80891400-80893800	Enhancers	NHEK	skin
2	chr14:80891400-80894400	Enhancers	Hela-S3	cervix
3	chr14:80891600-80893800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:80891600-80893800	Enhancers	NH-A	brain
5	chr14:80891800-80893600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:80891800-80893800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:80892200-80893800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:80892200-80893800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:80892400-80893400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:80892400-80893400	Enhancers	NHLF	lung
11	chr14:80892800-80893400	Enhancers	A549	lung
12	chr14:80893000-80893800	Enhancers	Osteobl	bone
13	chr14:80893000-80894200	Weak transcription	Placenta	Placenta
14	chr14:80893000-80900800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:80893200-80893600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:80893200-80893600	Weak transcription	HUVEC	blood vessel

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