Variant report

Variant	rs10139256
Chromosome Location	chr14:65140838-65140839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65138393..65141206-chr14:65169744..65173083,3	MCF-7	breast:
2	chr14:65139588..65142521-chr14:65175762..65178559,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10147757	1.00[EUR][1000 genomes]
rs229678	1.00[EUR][1000 genomes]
rs229679	1.00[EUR][1000 genomes]
rs28708728	1.00[EUR][1000 genomes]
rs7160627	1.00[EUR][1000 genomes]
rs73271685	1.00[EUR][1000 genomes]
rs8008283	1.00[EUR][1000 genomes]
rs8017680	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65138400-65141000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr14:65138400-65141200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:65138400-65141400	Enhancers	Primary T cells from cord blood	blood
5	chr14:65138400-65141400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:65138400-65141400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr14:65138400-65141600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:65138400-65144000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:65138600-65141200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr14:65138600-65142200	Weak transcription	Stomach Mucosa	stomach
11	chr14:65138600-65142400	Enhancers	A549	lung
12	chr14:65138600-65142600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:65138600-65143800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr14:65138800-65141600	Weak transcription	Liver	Liver
15	chr14:65138800-65142000	Weak transcription	Fetal Intestine Small	intestine
16	chr14:65138800-65142400	Weak transcription	Adipose Nuclei	Adipose
17	chr14:65138800-65144200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:65138800-65144200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:65138800-65146600	Weak transcription	Brain Angular Gyrus	brain
20	chr14:65138800-65146600	Weak transcription	Fetal Intestine Large	intestine
21	chr14:65139000-65141000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:65139000-65141000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:65139000-65143200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr14:65139200-65142600	Enhancers	HMEC	breast
25	chr14:65139400-65142600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:65139600-65141200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:65139600-65142600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:65139600-65142600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:65139800-65141000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr14:65139800-65141000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:65139800-65141200	Enhancers	Esophagus	oesophagus
32	chr14:65139800-65141600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr14:65139800-65141600	Enhancers	Fetal Muscle Leg	muscle
34	chr14:65139800-65142600	Enhancers	NHEK	skin
35	chr14:65140000-65141000	Enhancers	Fetal Thymus	thymus
36	chr14:65140000-65141400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr14:65140000-65143400	Enhancers	Spleen	Spleen
38	chr14:65140200-65141000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:65140200-65141000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:65140200-65142400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:65140200-65142600	Enhancers	Duodenum Mucosa	Duodenum
42	chr14:65140200-65143000	Enhancers	Hela-S3	cervix
43	chr14:65140200-65144400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr14:65140400-65141000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr14:65140400-65141000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:65140400-65142400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr14:65140400-65143400	Enhancers	Placenta	Placenta
48	chr14:65140600-65141000	Enhancers	Fetal Muscle Trunk	muscle
49	chr14:65140600-65141000	Enhancers	Lung	lung
50	chr14:65140600-65141000	Enhancers	Placenta Amnion	Placenta Amnion

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