Variant report

Variant	rs10147757
Chromosome Location	chr14:65176920-65176921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65168529..65178400-chr14:65179583..65195815,52	MCF-7	breast:
2	chr14:65168335..65178043-chr14:65220677..65234710,31	MCF-7	breast:
3	chr14:65139588..65142521-chr14:65175762..65178559,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10139256	1.00[EUR][1000 genomes]
rs229678	1.00[EUR][1000 genomes]
rs229679	1.00[EUR][1000 genomes]
rs28708728	1.00[EUR][1000 genomes]
rs7160627	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73271685	1.00[EUR][1000 genomes]
rs8008283	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65171800-65177200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr14:65172800-65178000	Enhancers	Fetal Heart	heart
3	chr14:65173000-65177000	Enhancers	Pancreas	Pancrea
4	chr14:65173000-65177000	Enhancers	Right Atrium	heart
5	chr14:65173000-65177600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr14:65173200-65177000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:65173200-65178000	Enhancers	Spleen	Spleen
8	chr14:65173400-65178000	Enhancers	Adipose Nuclei	Adipose
9	chr14:65173800-65178000	Enhancers	Ovary	ovary
10	chr14:65173800-65179000	Enhancers	Liver	Liver
11	chr14:65174400-65178000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr14:65174600-65177000	Weak transcription	Aorta	Aorta
13	chr14:65174800-65177000	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr14:65175000-65177000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:65175000-65178000	Enhancers	Left Ventricle	heart
16	chr14:65175200-65178600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:65175200-65181000	Weak transcription	Hela-S3	cervix
18	chr14:65175200-65181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:65175400-65177000	Genic enhancers	Fetal Intestine Small	intestine
20	chr14:65175400-65177200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:65175800-65177000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:65175800-65177000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr14:65175800-65177000	Genic enhancers	Fetal Intestine Large	intestine
24	chr14:65175800-65177600	Genic enhancers	A549	lung
25	chr14:65175800-65177800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:65175800-65178200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr14:65176000-65177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr14:65176000-65177000	Genic enhancers	HMEC	breast
29	chr14:65176000-65177200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:65176000-65177400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:65176000-65177600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65176000-65177800	Enhancers	Placenta	Placenta
33	chr14:65176000-65178000	Enhancers	Brain Angular Gyrus	brain
34	chr14:65176000-65178000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr14:65176000-65178000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:65176000-65178200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:65176000-65178200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr14:65176000-65180000	Weak transcription	Fetal Kidney	kidney
39	chr14:65176000-65186400	Weak transcription	Osteobl	bone
40	chr14:65176200-65177000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr14:65176200-65177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:65176200-65177000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:65176200-65177000	Weak transcription	Lung	lung
44	chr14:65176200-65177200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:65176200-65177600	Genic enhancers	Fetal Muscle Leg	muscle
46	chr14:65176200-65177600	Enhancers	Stomach Smooth Muscle	stomach
47	chr14:65176200-65178000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr14:65176200-65178000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr14:65176200-65178200	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr14:65176200-65178400	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links