Variant report

Variant	rs73271685
Chromosome Location	chr14:65147070-65147071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65146774..65148576-chr14:65150187..65151752,2	MCF-7	breast:
2	chr14:65143231..65150356-chr14:65170206..65174576,10	MCF-7	breast:
3	chr14:65141900..65144067-chr14:65145752..65147507,2	MCF-7	breast:
4	chr14:65135349..65138709-chr14:65145103..65149484,4	MCF-7	breast:
5	chr14:65145652..65150075-chr14:65165666..65170172,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10139256	1.00[EUR][1000 genomes]
rs10147757	1.00[EUR][1000 genomes]
rs229678	1.00[EUR][1000 genomes]
rs229679	1.00[EUR][1000 genomes]
rs28708728	1.00[EUR][1000 genomes]
rs7160627	1.00[EUR][1000 genomes]
rs8008283	1.00[EUR][1000 genomes]
rs8017680	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65140800-65148800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:65142600-65148600	Weak transcription	Stomach Mucosa	stomach
4	chr14:65142600-65149000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:65142600-65154400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:65143400-65149200	Weak transcription	Spleen	Spleen
7	chr14:65143600-65148200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr14:65145400-65149000	Enhancers	Brain Cingulate Gyrus	brain
9	chr14:65145600-65148600	Enhancers	Brain Anterior Caudate	brain
10	chr14:65145600-65149800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:65145600-65151400	Enhancers	HMEC	breast
12	chr14:65145800-65148800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65146200-65147200	Enhancers	NHEK	skin
14	chr14:65146200-65148800	Enhancers	Brain Substantia Nigra	brain
15	chr14:65146200-65150200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:65146200-65153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr14:65146400-65148600	Enhancers	Brain Hippocampus Middle	brain
18	chr14:65146400-65149200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:65146400-65150000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:65146400-65150400	Enhancers	Esophagus	oesophagus
21	chr14:65146400-65151000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:65146600-65147400	Enhancers	Fetal Intestine Large	intestine
23	chr14:65146600-65147800	Enhancers	Fetal Kidney	kidney
24	chr14:65146600-65148400	Enhancers	Stomach Smooth Muscle	stomach
25	chr14:65146600-65148600	Enhancers	Hela-S3	cervix
26	chr14:65146600-65148800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:65146600-65149000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr14:65146600-65149000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:65146600-65149200	Enhancers	Fetal Intestine Small	intestine
30	chr14:65146600-65149400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:65146600-65150000	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr14:65146600-65150200	Enhancers	Rectal Smooth Muscle	rectum
33	chr14:65146600-65151400	Enhancers	Colon Smooth Muscle	Colon
34	chr14:65146600-65151600	Enhancers	Brain Angular Gyrus	brain
35	chr14:65146600-65153200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:65146800-65147200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
37	chr14:65146800-65147200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr14:65146800-65147200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr14:65146800-65147200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr14:65146800-65147200	Flanking Bivalent TSS/Enh	HepG2	liver
41	chr14:65146800-65147400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr14:65146800-65147400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr14:65146800-65147400	Enhancers	Fetal Heart	heart
44	chr14:65146800-65147400	Enhancers	Right Atrium	heart
45	chr14:65146800-65147400	Enhancers	NHDF-Ad	bronchial
46	chr14:65146800-65147600	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr14:65146800-65147600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:65146800-65147800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:65146800-65148000	Enhancers	A549	lung
50	chr14:65146800-65149000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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