Variant report

Variant	rs229679
Chromosome Location	chr14:65152963-65152964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65150365..65152992-chr14:65154794..65157024,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10139256	1.00[EUR][1000 genomes]
rs10147757	1.00[EUR][1000 genomes]
rs229678	1.00[EUR][1000 genomes]
rs28708728	1.00[EUR][1000 genomes]
rs7160627	1.00[EUR][1000 genomes]
rs73271685	1.00[EUR][1000 genomes]
rs8008283	1.00[EUR][1000 genomes]
rs8017680	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65142600-65154400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:65146200-65153200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:65146600-65153200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:65146800-65153000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:65146800-65153000	Enhancers	Placenta	Placenta
6	chr14:65147000-65153000	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:65147000-65155000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:65149000-65154200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:65149200-65155200	Weak transcription	Colonic Mucosa	Colon
10	chr14:65149400-65153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:65149400-65153000	Weak transcription	Fetal Lung	lung
12	chr14:65149400-65155000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:65149400-65155000	Weak transcription	Fetal Intestine Large	intestine
14	chr14:65149400-65159000	Weak transcription	Right Atrium	heart
15	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:65149600-65153200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr14:65149600-65154600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:65149600-65155000	Weak transcription	Stomach Mucosa	stomach
19	chr14:65149600-65159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:65149800-65153000	Enhancers	Brain Hippocampus Middle	brain
21	chr14:65149800-65153000	Weak transcription	Fetal Heart	heart
22	chr14:65149800-65153200	Enhancers	Brain Substantia Nigra	brain
23	chr14:65149800-65155000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:65150000-65153200	Enhancers	Brain Cingulate Gyrus	brain
25	chr14:65150000-65155000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:65150200-65155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:65150200-65159000	Weak transcription	Right Ventricle	heart
28	chr14:65150400-65155200	Weak transcription	Esophagus	oesophagus
29	chr14:65150600-65153000	Enhancers	Fetal Kidney	kidney
30	chr14:65150600-65153200	Enhancers	Fetal Stomach	stomach
31	chr14:65151200-65154800	Weak transcription	Fetal Intestine Small	intestine
32	chr14:65151200-65159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:65151400-65155000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:65151400-65155000	Weak transcription	HMEC	breast
35	chr14:65151400-65155200	Weak transcription	Pancreas	Pancrea
36	chr14:65152000-65153200	Enhancers	Brain Angular Gyrus	brain
37	chr14:65152200-65153000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr14:65152200-65153000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr14:65152200-65153000	Enhancers	Fetal Thymus	thymus
40	chr14:65152200-65153200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:65152200-65153200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:65152200-65153200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr14:65152400-65153000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr14:65152400-65153000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:65152400-65153200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:65152400-65153200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr14:65152400-65159200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:65152600-65153000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:65152600-65153200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:65152600-65153200	Enhancers	Spleen	Spleen

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