Variant report

Variant	rs10140162
Chromosome Location	chr14:77846379-77846380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000100577	Chromatin interaction
ENSG00000151445	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10138606	1.00[AMR][1000 genomes]
rs10145195	1.00[AMR][1000 genomes]
rs10147727	1.00[AMR][1000 genomes]
rs10438171	1.00[AMR][1000 genomes]
rs17105786	1.00[AMR][1000 genomes]
rs28587702	1.00[AMR][1000 genomes]
rs28834759	1.00[AMR][1000 genomes]
rs28909971	1.00[AMR][1000 genomes]
rs7141831	1.00[AMR][1000 genomes]
rs877895	1.00[AMR][1000 genomes]
rs994223	1.00[AMR][1000 genomes]
rs9944157	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902107	chr14:77790416-77871777	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77844200-77848600	Weak transcription	Psoas Muscle	Psoas
2	chr14:77844200-77849400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:77844200-77849400	Weak transcription	Fetal Intestine Small	intestine
4	chr14:77844400-77847000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:77844400-77847800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:77844400-77847800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:77844400-77849200	Weak transcription	Fetal Intestine Large	intestine
8	chr14:77844400-77855600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:77844400-77862200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:77846000-77847000	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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