Variant report

Variant	rs10145195
Chromosome Location	chr14:77927053-77927054
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:77921860..77928400-chr14:77931824..77937732,8	MCF-7	breast:
2	chr14:77925306..77928562-chr14:78081993..78085089,3	MCF-7	breast:
3	chr14:77787369..77789536-chr14:77923983..77928279,4	K562	blood:
4	chr14:77924775..77928699-chr14:77931957..77935059,4	K562	blood:
5	chr14:77599632..77602210-chr14:77926628..77928596,2	MCF-7	breast:
6	chr14:77785598..77789538-chr14:77924091..77927637,5	MCF-7	breast:
7	chr14:77789665..77794031-chr14:77921841..77927059,7	MCF-7	breast:
8	chr14:77771713..77774149-chr14:77924660..77927150,3	MCF-7	breast:
9	chr14:77926565..77928660-chr9:102583665..102585481,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100577	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100596	Chromatin interaction
ENSG00000119508	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000212371	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10138606	1.00[AMR][1000 genomes]
rs10140162	1.00[AMR][1000 genomes]
rs10147727	1.00[AMR][1000 genomes]
rs10438171	1.00[AMR][1000 genomes]
rs17105786	1.00[AMR][1000 genomes]
rs28587702	1.00[AMR][1000 genomes]
rs28834759	1.00[AMR][1000 genomes]
rs28909971	1.00[AMR][1000 genomes]
rs7141831	1.00[AMR][1000 genomes]
rs877895	1.00[AMR][1000 genomes]
rs994223	1.00[AMR][1000 genomes]
rs9944157	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77925600-77936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:77925800-77928400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:77925800-77936400	Strong transcription	Fetal Muscle Trunk	muscle
4	chr14:77926000-77929600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:77926000-77936200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:77926000-77936200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:77926000-77936400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:77926000-77936800	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr14:77926000-77936800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr14:77926000-77939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:77926200-77927600	Weak transcription	Esophagus	oesophagus
12	chr14:77926200-77928400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:77926200-77928400	Weak transcription	Small Intestine	intestine
14	chr14:77926200-77928400	Weak transcription	Stomach Mucosa	stomach
15	chr14:77926200-77932000	Strong transcription	Colonic Mucosa	Colon
16	chr14:77926200-77932200	Strong transcription	Rectal Smooth Muscle	rectum
17	chr14:77926200-77932800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:77926200-77933400	Strong transcription	Fetal Brain Male	brain
19	chr14:77926200-77933800	Strong transcription	Gastric	stomach
20	chr14:77926200-77935400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr14:77926200-77935600	Strong transcription	HSMM	muscle
22	chr14:77926200-77935800	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr14:77926200-77936000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:77926200-77936000	Strong transcription	NHDF-Ad	bronchial
25	chr14:77926200-77936200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:77926200-77936200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr14:77926200-77936200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:77926200-77936200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr14:77926200-77936200	Strong transcription	Fetal Intestine Large	intestine
30	chr14:77926200-77936200	Strong transcription	Placenta	Placenta
31	chr14:77926200-77936200	Strong transcription	Fetal Thymus	thymus
32	chr14:77926200-77936200	Strong transcription	Lung	lung
33	chr14:77926200-77936200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr14:77926200-77936400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:77926200-77936400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:77926200-77936400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:77926200-77936400	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr14:77926200-77936600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:77926200-77936800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:77926200-77936800	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr14:77926200-77937000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:77926200-77937000	Strong transcription	Fetal Stomach	stomach
43	chr14:77926200-77937000	Strong transcription	Ovary	ovary
44	chr14:77926400-77927400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:77926400-77927400	Weak transcription	Right Ventricle	heart
46	chr14:77926400-77927600	Weak transcription	Thymus	Thymus
47	chr14:77926400-77928200	Genic enhancers	Brain Anterior Caudate	brain
48	chr14:77926400-77928200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr14:77926400-77928400	Weak transcription	Fetal Heart	heart
50	chr14:77926400-77932200	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links