Variant report

Variant	rs28834759
Chromosome Location	chr14:77914129-77914130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77913835..77918177-chr14:77920154..77926253,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100591	Chromatin interaction
ENSG00000151445	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10129713	0.89[AFR][1000 genomes]
rs10138606	1.00[AMR][1000 genomes]
rs10140162	1.00[AMR][1000 genomes]
rs10145195	1.00[AMR][1000 genomes]
rs10147727	1.00[AMR][1000 genomes]
rs10438171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105786	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587702	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28909971	1.00[AMR][1000 genomes]
rs7141831	1.00[AMR][1000 genomes]
rs877895	1.00[AMR][1000 genomes]
rs994223	1.00[AMR][1000 genomes]
rs9944157	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041985	chr14:77877421-77936969	Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77887000-77919800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:77887000-77920400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr14:77887200-77920200	Strong transcription	Placenta	Placenta
4	chr14:77887200-77920600	Strong transcription	Primary T cells from cord blood	blood
5	chr14:77887400-77920000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr14:77887400-77920400	Strong transcription	Liver	Liver
7	chr14:77887600-77920000	Strong transcription	Fetal Intestine Large	intestine
8	chr14:77887800-77920000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:77888000-77920000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:77888200-77920400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr14:77888400-77920000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:77888600-77920000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:77888600-77920600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:77889200-77920400	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr14:77889600-77920400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:77891600-77923200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:77894200-77923000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:77896200-77915800	Weak transcription	Hela-S3	cervix
19	chr14:77896200-77923200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:77897400-77920600	Strong transcription	Osteobl	bone
21	chr14:77901800-77923000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:77904000-77920600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:77905000-77919800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:77905000-77919800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr14:77905400-77920600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:77905800-77914600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:77905800-77915400	Strong transcription	Fetal Intestine Small	intestine
28	chr14:77905800-77918400	Strong transcription	Fetal Muscle Leg	muscle
29	chr14:77905800-77918400	Strong transcription	Lung	lung
30	chr14:77905800-77919800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:77905800-77919800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr14:77905800-77920000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:77905800-77920000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:77905800-77920000	Strong transcription	Fetal Stomach	stomach
35	chr14:77905800-77920000	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:77905800-77920400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:77905800-77920400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr14:77905800-77920600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:77905800-77920600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:77905800-77920600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr14:77906000-77920400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:77906200-77919800	Strong transcription	Fetal Thymus	thymus
43	chr14:77906200-77920000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:77907000-77918400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:77907000-77920400	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr14:77907200-77918200	Strong transcription	GM12878-XiMat	blood
47	chr14:77907200-77919800	Strong transcription	Adipose Nuclei	Adipose
48	chr14:77907400-77920000	Strong transcription	Brain Cingulate Gyrus	brain
49	chr14:77907400-77920600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:77907600-77920400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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