Variant report

Variant	rs9944157
Chromosome Location	chr14:77771966-77771967
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77493943..77495664-chr14:77769543..77772430,2	MCF-7	breast:
2	chr14:77493529..77496906-chr14:77768438..77773961,7	MCF-7	breast:
3	chr14:77770444..77771981-chr14:77772678..77775032,2	K562	blood:
4	chr14:77766406..77773210-chr14:77841892..77846481,6	MCF-7	breast:
5	chr14:77648085..77652144-chr14:77770230..77773335,4	MCF-7	breast:
6	chr14:77607238..77609198-chr14:77769869..77772335,2	MCF-7	breast:
7	chr14:77771713..77774149-chr14:77924660..77927150,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119669	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100583	Chromatin interaction
ENSG00000165548	Chromatin interaction
ENSG00000100580	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000177108	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10138606	1.00[AMR][1000 genomes]
rs10140162	1.00[AMR][1000 genomes]
rs10145195	1.00[AMR][1000 genomes]
rs10147727	1.00[AMR][1000 genomes]
rs10438171	1.00[AMR][1000 genomes]
rs17105786	1.00[AMR][1000 genomes]
rs28587702	1.00[AMR][1000 genomes]
rs28834759	1.00[AMR][1000 genomes]
rs28909971	1.00[AMR][1000 genomes]
rs7141831	1.00[AMR][1000 genomes]
rs877895	1.00[AMR][1000 genomes]
rs994223	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902105	chr14:77764884-77801431	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv902106	chr14:77767978-77801431	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
3	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:77751400-77775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:77751800-77775600	Weak transcription	Thymus	Thymus
7	chr14:77752200-77775600	Weak transcription	Fetal Thymus	thymus
8	chr14:77752600-77773000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:77752600-77779200	Weak transcription	Fetal Heart	heart
10	chr14:77760400-77773000	Strong transcription	Fetal Stomach	stomach
11	chr14:77762600-77772400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:77762800-77772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:77762800-77774800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:77765000-77772000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:77765400-77772000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:77765600-77773200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:77766200-77772600	Strong transcription	Dnd41	blood
18	chr14:77766200-77772800	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:77766200-77775200	Weak transcription	Primary T cells from cord blood	blood
20	chr14:77766400-77779200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:77767200-77772400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr14:77767600-77772200	Enhancers	HSMMtube	muscle
23	chr14:77767600-77773000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr14:77767800-77773600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:77767800-77780400	Weak transcription	Colonic Mucosa	Colon
26	chr14:77768000-77772200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr14:77768000-77772800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr14:77768000-77780600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr14:77768000-77780600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:77768200-77772600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:77768400-77772000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:77768400-77772400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr14:77768600-77772000	Strong transcription	Fetal Lung	lung
34	chr14:77768600-77772600	Strong transcription	Ovary	ovary
35	chr14:77768800-77780400	Weak transcription	Right Ventricle	heart
36	chr14:77769000-77772800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:77769000-77776000	Enhancers	Placenta	Placenta
38	chr14:77769200-77772400	Strong transcription	Adipose Nuclei	Adipose
39	chr14:77769200-77773200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:77769600-77772000	Weak transcription	Aorta	Aorta
41	chr14:77769600-77772000	Weak transcription	Spleen	Spleen
42	chr14:77769600-77772400	Enhancers	Brain Substantia Nigra	brain
43	chr14:77769600-77773200	Enhancers	Brain Angular Gyrus	brain
44	chr14:77770000-77772000	Weak transcription	Gastric	stomach
45	chr14:77770000-77772000	Weak transcription	Lung	lung
46	chr14:77770000-77772000	Weak transcription	Pancreas	Pancrea
47	chr14:77770000-77772000	Weak transcription	Psoas Muscle	Psoas
48	chr14:77770000-77772400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:77770000-77774200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr14:77770000-77774200	Enhancers	Skeletal Muscle Female	skeletal muscle

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