Variant report

Variant	rs10141661
Chromosome Location	chr14:64829574-64829575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10135928	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10138188	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10142051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10142442	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10146291	0.85[EUR][1000 genomes]
rs10151845	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2022748	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28605559	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28859150	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57126344	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59789110	0.85[EUR][1000 genomes]
rs60554486	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7148867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73271893	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8011634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:64827600-64830200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:64828800-64830000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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