Variant report

Variant	rs10142442
Chromosome Location	chr14:64870277-64870278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64868893..64872016-chr14:64968174..64970935,3	MCF-7	breast:
2	chr14:64859490..64861668-chr14:64868131..64870784,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10135928	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138188	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142051	1.00[AMR][1000 genomes]
rs10151845	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605559	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630894	0.90[EUR][1000 genomes]
rs28859150	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57126344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60554486	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148867	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271893	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856000-64886200	Weak transcription	Fetal Brain Male	brain
2	chr14:64856000-64913000	Weak transcription	Small Intestine	intestine
3	chr14:64856200-64870400	Weak transcription	Fetal Brain Female	brain
4	chr14:64856200-64870400	Weak transcription	Fetal Intestine Large	intestine
5	chr14:64856200-64882200	Weak transcription	HSMMtube	muscle
6	chr14:64856200-64883800	Weak transcription	Esophagus	oesophagus
7	chr14:64856200-64885600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:64856200-64886400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
10	chr14:64856400-64870400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:64856400-64870600	Weak transcription	Psoas Muscle	Psoas
12	chr14:64856400-64875800	Weak transcription	Thymus	Thymus
13	chr14:64856400-64877800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:64856400-64882400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:64856600-64870600	Weak transcription	NH-A	brain
16	chr14:64856600-64879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:64856800-64870400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:64856800-64870600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:64856800-64877800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:64856800-64881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr14:64856800-64881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:64856800-64882000	Weak transcription	Fetal Lung	lung
23	chr14:64856800-64882000	Weak transcription	NHLF	lung
24	chr14:64856800-64885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr14:64857000-64870600	Weak transcription	NHDF-Ad	bronchial
26	chr14:64857000-64881800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:64857200-64880400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:64858000-64870600	Weak transcription	Fetal Kidney	kidney
29	chr14:64858600-64870600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:64858600-64872200	Weak transcription	Brain Hippocampus Middle	brain
31	chr14:64858800-64870400	Weak transcription	Primary B cells from cord blood	blood
32	chr14:64859000-64878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:64859000-64879400	Weak transcription	Lung	lung
34	chr14:64859400-64870400	Weak transcription	Fetal Thymus	thymus
35	chr14:64859400-64870600	Weak transcription	Brain Anterior Caudate	brain
36	chr14:64859400-64875400	Weak transcription	Aorta	Aorta
37	chr14:64859400-64877000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:64860600-64877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:64860800-64882400	Weak transcription	Spleen	Spleen
40	chr14:64861000-64870600	Weak transcription	Primary T cells from cord blood	blood
41	chr14:64861000-64870600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:64861000-64877000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:64861000-64877000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr14:64861000-64877800	Weak transcription	Left Ventricle	heart
45	chr14:64861000-64882200	Weak transcription	Ovary	ovary
46	chr14:64861000-64882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:64861000-64882400	Weak transcription	Gastric	stomach
48	chr14:64861200-64877000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:64861200-64886000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr14:64861800-64881800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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