Variant report

Variant	rs28859150
Chromosome Location	chr14:64838057-64838058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10135928	0.83[AFR][1000 genomes]
rs10138188	0.83[AFR][1000 genomes]
rs10141661	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10142051	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142442	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10146291	1.00[EUR][1000 genomes]
rs10151845	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2022748	1.00[EUR][1000 genomes]
rs28605559	0.86[AFR][1000 genomes]
rs57126344	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59789110	1.00[EUR][1000 genomes]
rs60554486	0.83[AFR][1000 genomes]
rs7148867	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73271893	0.83[AFR][1000 genomes]
rs8011634	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64816400-64853400	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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