Variant report

Variant	rs10141820
Chromosome Location	chr14:31695186-31695187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10136337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141190	1.00[AMR][1000 genomes]
rs10150426	1.00[AMR][1000 genomes]
rs10150443	1.00[AMR][1000 genomes]
rs10151256	1.00[AMR][1000 genomes]
rs17097770	1.00[AMR][1000 genomes]
rs17097773	1.00[AMR][1000 genomes]
rs28413001	1.00[AMR][1000 genomes]
rs28508039	1.00[AMR][1000 genomes]
rs28715098	1.00[AMR][1000 genomes]
rs28789531	1.00[AMR][1000 genomes]
rs28867507	1.00[AMR][1000 genomes]
rs41436351	0.94[ASN][1000 genomes]
rs41487450	1.00[AMR][1000 genomes]
rs57371146	1.00[AMR][1000 genomes]
rs7155662	1.00[AMR][1000 genomes]
rs73253150	1.00[AMR][1000 genomes]
rs73265488	1.00[AMR][1000 genomes]
rs73267405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74042191	1.00[ASN][1000 genomes]
rs74042192	1.00[ASN][1000 genomes]
rs74042194	1.00[ASN][1000 genomes]
rs74042197	0.94[ASN][1000 genomes]
rs74042199	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31692400-31696400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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