Variant report

Variant	rs7155662
Chromosome Location	chr14:31727400-31727401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10136337	1.00[AMR][1000 genomes]
rs10141190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141820	1.00[AMR][1000 genomes]
rs10147374	0.91[AFR][1000 genomes]
rs10150426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150443	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413001	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28789531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28867507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41487450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253150	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253152	0.91[AFR][1000 genomes]
rs73265488	1.00[AMR][1000 genomes]
rs73267405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31707800-31730800	Weak transcription	Pancreas	Pancrea
2	chr14:31721200-31731000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:31721200-31731000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:31724800-31727600	Enhancers	HepG2	liver
5	chr14:31726200-31728200	Enhancers	Stomach Mucosa	stomach
6	chr14:31726400-31728200	Enhancers	Fetal Intestine Large	intestine
7	chr14:31726400-31728200	Enhancers	Fetal Intestine Small	intestine
8	chr14:31726400-31736000	Enhancers	Liver	Liver
9	chr14:31726800-31728200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr14:31726800-31730200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:31727000-31730600	Weak transcription	GM12878-XiMat	blood
12	chr14:31727200-31735000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links