Variant report

Variant	rs17097773
Chromosome Location	chr14:31722169-31722170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10136337	1.00[AMR][1000 genomes]
rs10141190	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141820	1.00[AMR][1000 genomes]
rs10150426	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150443	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151256	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097770	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413001	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28789531	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28867507	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41487450	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371146	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73265488	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73267405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31707800-31730800	Weak transcription	Pancreas	Pancrea
2	chr14:31713800-31722200	Weak transcription	Lung	lung
3	chr14:31720200-31723800	Enhancers	HepG2	liver
4	chr14:31720400-31722600	Enhancers	Stomach Mucosa	stomach
5	chr14:31721000-31722800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:31721000-31726400	Weak transcription	Fetal Intestine Small	intestine
7	chr14:31721000-31726400	Weak transcription	Gastric	stomach
8	chr14:31721200-31726400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr14:31721200-31731000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:31721200-31731000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:31721400-31726800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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