Variant report

Variant	rs28789531
Chromosome Location	chr14:31736073-31736074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31735111..31736764-chr14:31740143..31742182,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10136337	1.00[AMR][1000 genomes]
rs10141190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10141820	1.00[AMR][1000 genomes]
rs10147374	0.92[AFR][1000 genomes]
rs10150426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150443	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151256	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097773	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28508039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28867507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41487450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57371146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7155662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73253152	0.92[AFR][1000 genomes]
rs73265488	1.00[AMR][1000 genomes]
rs73267405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31729400-31736200	Enhancers	Stomach Mucosa	stomach
2	chr14:31733400-31736200	Enhancers	NHDF-Ad	bronchial
3	chr14:31733400-31737000	Weak transcription	HSMMtube	muscle
4	chr14:31733400-31739400	Weak transcription	Esophagus	oesophagus
5	chr14:31733600-31736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:31733800-31737200	Weak transcription	Fetal Lung	lung
7	chr14:31734000-31738600	Weak transcription	HUVEC	blood vessel
8	chr14:31735400-31738800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr14:31735400-31738800	Weak transcription	Osteobl	bone
10	chr14:31735400-31739600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:31735400-31743200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:31735400-31743400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:31735600-31736800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:31735600-31738200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:31735600-31738600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:31735600-31743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:31735800-31736600	Enhancers	HepG2	liver
18	chr14:31735800-31737600	Weak transcription	NHLF	lung
19	chr14:31735800-31740400	Weak transcription	HMEC	breast
20	chr14:31736000-31736600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:31736000-31737600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:31736000-31739000	Weak transcription	Liver	Liver

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